E-Commerce offers the banking industry great opportunity, but also creates a set of new risks and vulnerability such as security threats. Information security, therefore, is an essential management and technical requirement for any efficient and effective Payment transaction activities over the internet. Still, its definition is a complex endeavor due to the constant technological and business change and requires a coordinated match of algorithm and technical solutions. Ecommerce is not appropriate to all business transactions and, within e-commerce there is no one technology that can or should be appropriate to all requirements. E-commerce is not a new phenomenon; electronic markets, electronic data interchange and customer e-commerce. The use of electronic data interchanges as a universal and non-proprietary way of doing business. Through the electronic transaction the security is the most important phenomena to enhance the banking transaction security via payment transaction.